E-commerce Merchant Services: Comprehensive Overview

When we think about e-commerce payments, traditional payment processors and gateways usually come to mind. However, this trend is rapidly changing. According to Statista, 74% of B2B customers would switch to a new e-commerce site for better purchasing options.
This highlights the importance of having an efficient payment system more than ever before.
In this article, we take a close look at e-commerce merchant services and how to choose the best provider for your business.
E-commerce businesses sell entirely online. They need merchant services to accept payments smoothly. Partnering with a reliable provider ensures seamless transactions and regulatory compliance. These services often include additional features, such as open banking payments and online reporting tools.
A merchant account for e-commerce is a specialised bank account for businesses to accept online payments. It serves as a bridge between the customer's bank and the business's bank.
When a customer makes an electronic payment, the merchant account processes the transaction by communicating with the card issuer. It withdraws funds from the customer’s bank and credits the merchant. Additionally, a merchant account connects businesses to merchant service providers.
These cover all the essentials needed for an e-commerce business to accept and process payments. For example, essential software and services needed to process cards, mobile wallets, contactless payments, and other methods.
Typically, these electronic commerce merchant services are provided by banks, payment processors, and other financial institutions. Some of the services include:
As an e-commerce business, you may encounter various payment fees. These can vary between providers, so it's important to check with each provider for specific details. Ensure you understand how their pricing works and confirm it fits within your budget. Below are some typical fees:
Fee type | Description |
Payment Gateway | Integration fee for hosted checkout pages and API for custom development |
Transaction Cost | Charged per transaction for processing credit and debit card payments |
Chargebacks | Fee for a reversed transaction |
Early Termination Fee | Charged if the contract is exited early, often based on the remaining contract period |
Setup Fee | Initial cost to set up physical or virtual terminal |
Cancellation Fee | Fixed fee for canceling the contract |
Minimum Monthly Transaction Fee | Smallest amount charged monthly on transaction fees |
Data Security Management | Fee for ensuring PCI compliance standards are met |
Non-secure Transaction | Fees for high-risk payments like mail, telephone, online (not pay-by-link), and non-chip and PIN payments |
Refunds | Fee for processing refunds |
Anti-Fraud Monitoring | Fee for services that monitor transactions to detect and prevent fraudulent activity |
Authorisation Fee | Charged each time a business authorises a credit card transaction |
Before setting up a merchant account for your e-commerce business, you’d need to choose a provider. To make the best decision, conduct a thorough research and consider multiple factors.
First, establish your payment processing needs. Evaluate factors like sales volume, average transaction value, and preferred payment methods. This helps identify essential features and ensures the provider can support your e-commerce business effectively.
Start by consulting reliable sources and online reviews for recommendations. Consider what e-commerce merchant solutions are used by other businesses.
Prioritise security and compliance to PCI DSS and fraud protection measures. Ensure seamless integration with your existing systems, including business management, CRM, accounting software, and hardware, to automate sales data import and improve accuracy.
Make sure e-commerce merchant account providers’ pricing is transparent and aligns with your budget and transaction volume. It’s worth also evaluating customer support, and checking client reviews on websites like Trustpilot.
Evaluate the provider’s services using a demo or trial period. Check for functionality, ease of use, and reliability. During this period, pay attention to processing speed and any potential issues.
​​Noda is a global open banking provider that assists merchants in e-commerce with end-user KYC, payment processing, LTV forecasting and UX optimisation. We partner with 2,000 banks across 28 countries, spanning over 30,000 bank branches. Noda supports a wide range of currencies for globally-minded clients. We offer scalable plans to fuel your business growth and e-commerce plugins for easy integration.
With Noda's advanced Open Banking API, online businesses can easily integrate direct bank payments, offering their customers a seamless and secure payment experience with lower fees. Whether you're looking to enhance customer verification processes, optimise payment systems, forecast long-term value, or refine the user experience, Noda is your partner in growth.
Yes, you need a merchant account for e-commerce to accept online payments. A merchant account acts as a bridge between your customer's bank and your business's bank, facilitating smooth and secure transactions.
Once you've chosen a provider, you can typically apply online and go through the setup process, which may include submitting business documents and setting up payment gateways. There are typically multiple integration options available: through APIs or UIs, just to name a few.
The best merchant services for small e-commerce businesses would offer a combination of user-friendly payment processing, robust security, and affordable pricing. Look for providers that support multiple payment methods. Providers that offer flexible contract terms and transparent fee structures may be especially beneficial for small businesses.